rs30422742 SNP Detail

Summary

• ID
  rs30422742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGGAAAGA TTGTACTCCA GTTTCCACCT AGAAGGGCAG
  AAAGATGAGT CATTGCGGTC CGGAGGTGAA CTACTGATCA CTGGGAGACT GATTGCCCCC
  S
  GTCTCTCAGA AGCTTTTACA AGTAAAACAT AATTACTGCA AAATTATCAT AGTCTACCTG
  GAGCAGCCCA CCTCGGCTGA TGACCCTCCT AAATTTAAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46406393	mCV23074477	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30422742					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290414 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1091 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684790	regulatory region 684790	996 bp distal
Rr684791	regulatory region 684791	77 bp distal
Tssr86547	transcription start site region 86547	922 bp downstream
Tssr90904	transcription start site region 90904	1242 bp upstream
Tssr90905	transcription start site region 90905	1170 bp upstream
Tssr90906	transcription start site region 90906	1149 bp upstream
Tssr90907	transcription start site region 90907	1122 bp upstream
Tssr90908	transcription start site region 90908	1085 bp upstream
Tssr90909	transcription start site region 90909	1062 bp upstream
Tssr90910	transcription start site region 90910	1028 bp upstream
Tssr90911	transcription start site region 90911	1000 bp upstream
Tssr90912	transcription start site region 90912	582 bp upstream