rs30422653 SNP Detail

Summary

• ID
  rs30422653
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113301943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC ACGGCAGTCA TAAGACATAT
  M
  AGCAAGCTAG ATAGAGTAGT AGCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45928514	mCV24112047	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
ss133564331	ENSMUSSNP4751508	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321910502	CHEV_6_113274976	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30422653					SNP	A	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113301943 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	122 bp downstream
Cpgi17839	CpG island 17839	1284 bp proximal
Gm15492	predicted gene 15492	within coordinates
Rr399830	regulatory region 399830	1603 bp upstream
Rr636489	regulatory region 636489	1001 bp proximal
Rr636490	regulatory region 636490	1740 bp proximal
Tssr62435	transcription start site region 62435	1653 bp downstream
Tssr62436	transcription start site region 62436	1744 bp downstream