rs30421809 SNP Detail

Summary

• ID
  rs30421809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18416230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCTGGG AAAGGGGGTT
  GTCTTGGATA CTAACAATAT TAAATAATGC GGAGAACCAC AGAAGGGTAG GAGGGATAGG
  AAGCCACAGA CTTGGCGACA GATAAGTTAG AAGTCTGACC CACCCACAGG AAGACAGTCA
  AATAATCTCC CAACAGAAAA TACTCTGAAA AACTGTCCAT GGTGGCTCAT GTGTAACCCC
  R
  GCATAAGAGA AGCTAGGACT GACAGACTGC TGTGAGTTGA TGGCTAGTCT GGGCTCCACT
  GGCAGTTCTA GACCACAGGG TTGGCTACAC AGGCAGTTCT ACACCACAGT TCTGGCTACA
  CAGACATGTC TATTGTATCT CAATAGAGGC CTCTATATCT CAAACAAACC AACAAAGAAA
  ACAAAAAGCA TTAAAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45928500	mCV23959704	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss133034508	ENSMUSSNP338130	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30421809					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18416230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			1822 bp upstream
Rr626921	regulatory region 626921			1668 bp proximal