rs30420609 SNP Detail

Summary

• ID
  rs30420609
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:7846350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCACTG AAAAGTCAGC
  ATTAGTGGAC AACTAACTTT AGTGTTTCAG ATTTTCTTGA AATTTATGTT TTCCTCTATC
  TTTTTACTCA GGACTCAGCA GTTTACAAAT GCTTTGTGGT CATTTCCCAC TTAAACTCCC
  TCTCCCTACA TTGTGCTCTT AAAAAAAAAA TCAGCCTACA GTTGTGGATA ACTTTAATAT
  S
  AAGCAGTTTA AAAGTACATA TAATGAGTTA ATGTTTGGCT AATTGTATTC AAAAGTATGT
  GCTGTATATT GCTTGTGTGT TGATTTTGCT GAAATGAAAA TTGTGTTATT CAGCTTAACT
  ATAAACTCAT GATAATATAA AGTCAAATCT TTGGTGAAAG TAGTGGTTGG AATTTTGTTG
  CAATTTATTT ATGAATCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45927865	mCV24777996	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss132955888	ENSMUSSNP2853742	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30420609					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7846350 () rs orientation: forward

Symbol	Name	Function Class
C1galt1	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	Intron
Cpgi17149	CpG island 17149	927 bp distal
Rr399558	regulatory region 399558	1625 bp downstream
Rr399559	regulatory region 399559	436 bp upstream
Rr626324	regulatory region 626324	1498 bp distal
Rr626325	regulatory region 626325	1773 bp distal
Rr626326	regulatory region 626326	132 bp distal
Rr626327	regulatory region 626327	451 bp proximal
Rr626328	regulatory region 626328	1207 bp proximal
Tssr54889	transcription start site region 54889	1673 bp downstream
Tssr54890	transcription start site region 54890	1547 bp downstream
Tssr54891	transcription start site region 54891	1491 bp downstream
Tssr54892	transcription start site region 54892	1051 bp downstream
Tssr54893	transcription start site region 54893	1021 bp downstream
Tssr54894	transcription start site region 54894	627 bp upstream