rs30418139 SNP Detail

Summary

• ID
  rs30418139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50579453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAATAACCAT TGTGTTAGTA GCAATAATAA ACAGTAAATG AAGGAATCAT TGATAGTTTT
  TTTCCTGTCT TTACTTTCAG TCAGGTCCAA GTTCAGGAGT AGTGAGGACA GGGCCTGGAG
  GCTGCTATAG GTGGTTCAGA TTCACAGTTG CCTAGGTGGA GCCCTTAGAA ACAATGAAAG
  CCAATTTGGC TACTTAGGGT CCAAGGCATG CATAGGTAGG ATAGCCTCTG CCAGTCACTT
  GCAGGGTAGT GGCTTTCTTT GGTTGAATCA GTGTCCCTTG CACTGCAGCT GAAGCTTTTT
  Y
  TTAGGATTGA ATCGGGTAGA ACTTAGGGTG ATTTGACCAA GAAGAGACTT TTATGAGATG
  TGCAGCAAAT CCCTACTAAG ACATGCAGCT TTTTTGTTTT GTTTTTGTTT TTGTTTTTTT
  TTTGTTTTTT GTTTTTTGTT TTTTCCGAAA CAGGGTTTCT CTGAATAGCC CTGGCTGTCC
  TGGAACTCAC TTGTAGACCA GGCTGGCCTT GAACTCAGAA ATCCACCTGC CTCTGCCTCT
  GCTGCCTCCC GAGTGCTGGG ATTAAAGGGG TGTGCCACCA TGCCCGGCGC AGCTTTGTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45927376	mCV24540465	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C	C
ss133182430	ENSMUSSNP2155498	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30418139					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50579453 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	500 bp distal
Rr630050	regulatory region 630050	657 bp distal