rs30417887 SNP Detail

Summary

• ID
  rs30417887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89323654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGT CTCTAGGTGC ATGTATGATG
  K
  GGGTCCCTGT GTGAACATGT ATGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45927273	mCV24907330	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss133371911	ENSMUSSNP3155566	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321851974	CHEV_6_89296666	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30417887					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89323654 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	109 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	415 bp distal
Rr634110	regulatory region 634110	1211 bp proximal
Rr634111	regulatory region 634111	1808 bp proximal
Tssr62006	transcription start site region 62006	1908 bp downstream