rs30417277 SNP Detail

Summary

• ID
  rs30417277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19401307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAATAACT AAAGCTGGAC
  TAGTGAACAT CAAAGGTGTT GAAATTTTTA TCTCTCCTTA AAAGTGATAT CTTTCATATG
  GACTAAAAGG TCTTCTCTGT GTTTGACCTC ATATATGGGC TGATGTAGGA GTTCTGTACA
  ACCAGCCTGG CATGAGAGAT CTAGTCTCTG CCAGAGTCAA TGCTGGGCAA AGTCTTACTG
  Y
  AGATGTCTTA TCGTCAATGG TGGTGTCTCC CTATCATCAC CATGACATTG ACGTATCCAT
  AGCAATGACC TAGCTTTCTG ATCCCCTGGT AAAGAGATAA CTTGGAAAAT GATCAGCGAT
  AGGTAGAAAT CTGATGAATT ATAAGAAAAG GAAGAAAAAG AAGGAGGGGA GATGGGGAGA
  AATGGAGAAA GGAAGTCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45428346	mCV25299503	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss134667116	ENSMUSSNP772029	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30417277					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19401307 () rs orientation: forward

Symbol	Name	Function Class
Gm52602	predicted gene, 52602	1797 bp downstream
Rr573976	regulatory region 573976	1102 bp proximal