rs30416445 SNP Detail

Summary

• ID
  rs30416445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108817622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGGCTCTCT AACAGTCAGA GTTTCTCCAG TTTGTTTGAG AACTGTACTA TTCAAGGGCA
  TACCCTTAGA ATAGATTTTG GACAAAATTA GGTTATTAAT TTTGTGAAAA TATTTATTAA
  GTGAAAATAT TCGCTTAAAC AAAAATCTGC AGTCCTACTA TGTACCACTT ACTGTCAAGT
  GTGGAGGAGA GTACAACAAA TAGGAATGAT AGCATCTCTG TCCTTAGCAA GCAAGGGGTA
  GAGACATAAT GGATGAGCAG GAGTGCTCAG GAGGGAGGCT GAGCTTGCTT AAGCTGCACA
  Y
  GCACCTCCTG ACTCTCCTTT CCCACAGCCG GCCACTCAGC CTCCCTCGCA GCTCCAGCGT
  TAGCACTAAT TACGCTGCAT TTACTTGTCT GGGTTTAAAA TATGGTTTTA AAATATGGTT
  GAAATCAGAT CATTTCCATG TCGGTTAAAC TATAGCATTT GTGATGGTTT TGTCCTTTCA
  GAAGGGAGTA ACACACTGTG GTATTGTATC TACACATGTC ACATAGTAGC CTTAATTTTT
  AAATTGGACA TAGAACTGAT AGTTTGTATA TTTTGTTTTT GTATCTTAAG TACTCATTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45926458	mCV24063889	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30416445					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108817622 () rs orientation: forward

Symbol	Name	Function Class
Edem1	ER degradation enhancer, mannosidase alpha-like 1	within coordinates
Rr368141	regulatory region 368141	879 bp downstream
Rr636222	regulatory region 636222	686 bp distal
Tssr58120	transcription start site region 58120	1439 bp downstream