rs30416180 SNP Detail

Summary

• ID
  rs30416180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC ATAAGTAAAA AGATGCAAGG
  R
  CACAGAAAAG ACTTAGGGGA GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45926055	mCV24757275	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132976314	ENSMUSSNP5854267	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321738441	CHEV_6_8898021	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30416180					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	127 bp proximal
Cpgi17156	CpG island 17156	1639 bp proximal
Nxph1	neurexophilin 1	410 bp upstream
Rr626455	regulatory region 626455	103 bp proximal
Rr626456	regulatory region 626456	608 bp proximal
Rr626457	regulatory region 626457	1165 bp proximal
Tssr54925	transcription start site region 54925	406 bp upstream
Tssr54926	transcription start site region 54926	549 bp upstream
Tssr54927	transcription start site region 54927	587 bp upstream
Tssr54928	transcription start site region 54928	894 bp upstream
Tssr54929	transcription start site region 54929	930 bp upstream
Tssr54930	transcription start site region 54930	1031 bp upstream
Tssr54931	transcription start site region 54931	1649 bp upstream
Tssr54932	transcription start site region 54932	1791 bp upstream