rs30415295 SNP Detail

Summary

• ID
  rs30415295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125198596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTAATT TTAAACAGTT
  ACTCTGACAT TTGCACCAAA ACACCTCCCT GGATAACAGG TTTGTCCTGT TTCTACTGGA
  CCTACTAATT TTGCAAACTC AGCCTTCAGT CATAACTGTG GCTGGTGTTT AAATGTTTCC
  TAAGAAGTAT TACTTAGAAT GTGGCATGCA AATTGCCCAA GATGAGAACT CTTCTCCTTG
  R
  GACATAAGAT TTATAGGTGT TCTCTGTTTT GATGGAATTT TGAGAGAAAC AGCTGGCACA
  CACATTTGAA ACTGAACGAC ACTGGCATAT GCTGTTTATC AGGAAATAGA TGCTATCCCC
  TAGCTCATAT TAGAAATGAA AACATCTCAG GGTAATATAT GTCATATTCA TATCCTAGAT
  TGTGAGCAGG ACACCGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45428560	mCV24033299	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss61078006	NES16589257	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		A	G	G	G		A	G	G	A		G
ss135807839	ENSMUSSNP1930338	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							G
ss320936168	CHEV_3_125107865	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30415295					SNP	G	G	A	G	A	G	A	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078006	NES16589257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125198596 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	861 bp distal
Rr584609	regulatory region 584609	243 bp distal
Tssr31558	transcription start site region 31558	816 bp downstream
Tssr31559	transcription start site region 31559	607 bp downstream