GCATA TTGGTCCTAA AGGACTAGGC R GTGCTCTAAT TCTTTGGAAG CCAAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45428150 | mCV25256587 | ABI | CRAMUS_MOUSE | f | SNP | A | G | A | G | ||||||||||||
ss46749248 | NES10738952 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | G | G | G | G | G | G | G | G | G | ||||
ss135474308 | ENSMUSSNP5334365 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | G | |||||||||||||
ss320836912 | CHEV_3_89054558 | CHEVERUD | SCREENING_POP | f | SNP | G | G | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
||||
rs30414594 | SNP | A | A | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46749248 | NES10738952 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:89157943 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13414 | CpG island 13414 | 803 bp proximal | ||||||
Krtcap2 | keratinocyte associated protein 2 | 907 bp downstream | ||||||
Rr367466 | regulatory region 367466 | 659 bp upstream | ||||||
Rr580001 | regulatory region 580001 | 362 bp distal | ||||||
Rr580002 | regulatory region 580002 | within coordinates | ||||||
Rr580003 | regulatory region 580003 | 64 bp distal | ||||||
Rr580004 | regulatory region 580004 | 20 bp distal | ||||||
Rr580005 | regulatory region 580005 | 829 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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