rs30414427 SNP Detail

Summary

• ID
  rs30414427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57520247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCTCA CAGTAATCAT
  GTTTTTAGAG ATGCCTCACG GGCCCTGGCA CCCACTTTAC CTTGGACAGT GAGAGGGAAA
  TATTTTCTCT TGTAATCCCT CTGAGTATAT TAACATAGCC TCTAAGTATG GATATGGAGG
  ACACAATTTG GTAAAACTTT TACTCTTAAC TACTGTGTAA TATTTAGATA AAACTTAAGC
  R
  AAAACAAAGC ATTTAAGTTT TGGTCAAACA TTTTTGTTCT TTAGTCGGGC CTTATAGATA
  TTATGAAGAG TAGAACAAGA ACTCTATTGA TTTAAGCAGT GGTTTCACAT CAGGGTACTG
  GACTTTTACC TTTCACACAC CTAATATAAC TTTCTGATAC TCTTATTACT TGCTTTATAG
  CTTTCTTGTT CACCTTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss45927990	mCV25134765	ABI	CRAMUS_MOUSE	f	SNP	A	G	G		G
ss51315063	NES13763374	PERLEGEN	MM_PANEL2	f	SNP				G		A	A
ss133241508	ENSMUSSNP6713567	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs30414427					SNP	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315063	NES13763374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57520247 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr379418	regulatory region 379418	938 bp downstream
Rr631143	regulatory region 631143	1831 bp distal
Rr631144	regulatory region 631144	401 bp proximal
Rr631145	regulatory region 631145	1382 bp proximal