rs30414385 SNP Detail

Summary

• ID
  rs30414385
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118454383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTGCAGT GTTTTAGAGC GGGGATGGGG AGTGGTGGTG
  TTCTACCCTC TAAAGTTGGG AGAGTGAAGT CCTAGGAAAT CATAGGCCAC AGCTCCAGGT
  S
  TCCTGTGAGA AAGTTAGAGA CAGCATTTTA GTACTGTATA CTGAGAAGCT GTCCTGACCC
  AATCAGAGGG ACCAGGATGA AGTACTACTG GCCTCTCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45926629	mCV24802910	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				C	G
ss48065594	NES11724172	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	C		G	C	G		G	C	C		C
ss133583016	ENSMUSSNP5684807	ENSEMBL	ENSEMBL_Sanger	f	SNP			C					G
ss321924601	CHEV_6_118427440	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30414385					SNP	G	G	C	G	C	C	C	G	C	G	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065594	NES11724172	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118454383 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17903	CpG island 17903			1542 bp proximal
Rr637483	regulatory region 637483			467 bp proximal
Rr637484	regulatory region 637484			1018 bp proximal
Rr637485	regulatory region 637485			1888 bp proximal
Tssr62662	transcription start site region 62662			1815 bp downstream
Zfp9	zinc finger protein 9			mRNA-UTR
				Splice-Site