rs30414257 SNP Detail

Summary

• ID
  rs30414257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104546762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG TCTGCCGCGG GCACGGGGTC
  Y
  CAAGGCATCC CTGTGGAGCA GATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45428452	mCV24812786	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss135570101	ENSMUSSNP4141965	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30414257					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104546762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	within coordinates
Gm65697	predicted gene, 65697	964 bp upstream
Rr367518	regulatory region 367518	973 bp downstream
Rr582556	regulatory region 582556	975 bp distal
Rr582557	regulatory region 582557	768 bp distal
Rr582558	regulatory region 582558	858 bp distal
Rr582559	regulatory region 582559	within coordinates
Rr582560	regulatory region 582560	211 bp distal
Rr582561	regulatory region 582561	1460 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31045	transcription start site region 31045	771 bp downstream
Tssr34883	transcription start site region 34883	1885 bp upstream
Tssr34884	transcription start site region 34884	1004 bp upstream
Tssr34885	transcription start site region 34885	904 bp upstream