rs30413877 SNP Detail

Summary

• ID
  rs30413877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125199881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACAGAT AAAAATTCTG
  ATGTAACTCT TTTATAAAAG AAAAGCTTTG GATAATTTTA TTATATTTTA TTTTTAAGAA
  ATCAATGAGA AAGCCATCTG TACATAATAA TCTAGATCAT TCTTTTGCTT TTTCCTGAAA
  ATAAAAAAAA TTGCATGTTC ATATAGAATG CATGTATATA CATTCACCTG AGAAGCAAGT
  R
  TCTTAGATTT CATCAGGCAT GAAAACTAAT ATATCTATTT GATACGGATT CGGTCTTCCT
  CCAAGAATGC TACCATGCCA TGATCATATG TTTAAAAGAA AAATACCTCA AATTCTTAAT
  TGATCTCAAT GTCAGACCTA GTGTTTCTAA ATGCTAAATA AATGTTTCTA ATCCATACAA
  GAGTTGAGCT GAGAAGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45428844	mCV24033275	ABI	CRAMUS_MOUSE	f	SNP	A	G					A		A
ss61078000	NES16589263	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G		G	A	A	A		G	A	A	G		A
ss135807854	ENSMUSSNP648218	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320936173	CHEV_3_125109150	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30413877					SNP	A	G	A	G	A	G	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078000	NES16589263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125199881 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584609	regulatory region 584609	1528 bp distal
Tssr31559	transcription start site region 31559	1892 bp downstream