rs30413652 SNP Detail

Summary

• ID
  rs30413652
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27172977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGCGAA ATCAGAAAGA
  GCTTGTGATT CGTGATATAG TGAGATTTTG CCAAAAGGAA AGAAAAAGGA AAGAAAGAAG
  AAATCTCCTT TGCAGTAATT CAGATTTTAC TGAAAGGCAT TATTAACACT AAATGAACAT
  AAATATGTAC TTGAATTGAG ATCGGTCATC ATGAATATGA GAGACACAGT TAAAAATGTA
  K
  TACCTGGTAT TGAGCTAATG AATAAGATAA GGTAGTCAGT ATACTACAAC TACACTAAAG
  CAGACACAGA TGTGTCTATT CCACATGTCA CACATATATT ATAATAAATT ATATACATAT
  CTTATATATA AATTATATAT GCATTTGTGT ATAAAACAAA TACAAAGGCT CACACACATA
  TCGTGAAAAG TAAGCAGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45428245	mCV24689247	ABI	CRAMUS_MOUSE	f	SNP	T	T	G			T	T
ss60380572	NES15885212	PERLEGEN	MM_PANEL2	f	SNP			G	G	G			T	T	T
ss134702185	ENSMUSSNP1127004	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30413652					SNP	T	T	G	G	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380572	NES15885212	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27172977 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574348	regulatory region 574348	386 bp distal