rs30413564 SNP Detail

Summary

• ID
  rs30413564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17749751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTCTAA TTTTTTTTTA
  AAGCACCTTC TGGAGCCAGC CATGTTTGGT ACTGAATCTT CATGTAAGTA AATGGATCCT
  ACTTTTCTGT TCTATAGAAT CTGTGTGCTG TCATGGTTTC GCTGACTTGA GTTCCTGTCA
  CTTTGCCTTA GGTTAGTAAT ATTTGCATTT GCCTCTAATT ACAGAGGAAC TGGTCCTGGG
  R
  AAGGGACTTC CCTGGAGTGG ATTATTCATT CTTAAAGCCA GGGATGTCAA TGTGGTCAAA
  ATCAGGCCTC CAAGAGGGAG GAGGCAAGAA GACAGTATCC AGGCGGCCTC TGAGACCCTG
  CTAATTGATG GGAATCAGGC CGGTCACCAA TATATTGTCA GAGGTTCCTA ATGTCCTTAA
  ACCCTAAAAT AGATGCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45927018	mCV22806983	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss133021968	ENSMUSSNP5980032	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30413564					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17749751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			852 bp upstream
Rr626852	regulatory region 626852			1676 bp distal
Rr626853	regulatory region 626853			526 bp distal
Rr626854	regulatory region 626854			within coordinates
Rr626855	regulatory region 626855			1221 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			649 bp downstream
Tssr55095	transcription start site region 55095			730 bp downstream
Tssr55096	transcription start site region 55096			601 bp downstream
Tssr55097	transcription start site region 55097			487 bp downstream
Tssr55098	transcription start site region 55098			180 bp downstream