rs30412870 SNP Detail

Summary

• ID
  rs30412870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32362041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CCTACTTGCC CTGAGGCTTC
  Y
  GGATGCTTGC CTGGGTCTCT CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45926223	mCV23047936	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss133099660	ENSMUSSNP1621582	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321777893	CHEV_6_32335106	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30412870					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32362041 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628102	regulatory region 628102	within coordinates
Rr628103	regulatory region 628103	1654 bp proximal