rs30412542 SNP Detail

Summary

• ID
  rs30412542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57881435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGCCT CCAGGCAGTG
  CGTCAATCCA GACAGAACAG GAATTTAGCT GTGGTTCAAA CAGTGCTGCC ATTGCTTGTA
  ACAGTACCTG GGATCTGGGT GGTGGTGGTC AGTAGCTAGA TTTTGAAGTA CCAGGCTAAA
  ATAATGATCA AATGGGGTTG AAACGACATG ATCCATGGGA GTTTAAAGTC ACAGAAGAGT
  Y
  TGAGGTTCAA GGGTTGGAAG TAAACTCATT TTTACCTCAT CTCTGAGTCT CCAAGAAACA
  TCTGGTTTGT GTATGTGTTT AATTATAATG TACCTCATTA CAAAAGAATT TGACTGCATT
  ATTTTCAAAG ATATGTTTGT ATCTCTCTGA ATCCATGAAG AAATATGTAA ATATATTATA
  ATAGGCATTT TAAAGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45427166	mCV24603856	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss46978689	NES10794278	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	C	T	C	C	T	C
ss135205305	ENSMUSSNP5084745	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30412542					SNP	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978689	NES10794278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57881435 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	1031 bp distal