rs30412433 SNP Detail

Summary

• ID
  rs30412433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142015547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAATGTT TGCATCTTTT
  GAGGCTGATT CTTCAAAACA CCACATACAA ACTGTTAATG TTGCAGCCAA AGAAGACTGA
  AATTAATGGA GGATACACAA AAGGACTTAC CTCCTGAGAG CAGTGGCACA TTATAATGCA
  GGACATGTGG ACAGTGAAAC GCAAATCAGT TAATCTATTT CGTGTAAGGC AGTTTGTTTC
  Y
  AGTCAGGAAT GTAAACCCTG TTCTATTCTT CATGGAGTAA AAGTGTAGCA GAGAGGAGCA
  GCATGCCAAG AGCAATAATT TATCCACAGA AGGAAGATTT AAATTTCTTT TAAAATGCCT
  TGATCATTGT TAGTTATAAG AACAGTTATG TAGCTGCTAA CAGTTACTCT CAGAACTATC
  ACTATGCTAG CCAGACTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45427762	mCV24246488	ABI	CRAMUS_MOUSE	f	SNP		C	C		T		T
ss61087814	NES16611421	PERLEGEN	MM_PANEL2	f	SNP	C			T		C	T	T		C	T	C	C		T
ss136012040	ENSMUSSNP1758834	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				T
ss321000231	CHEV_3_141972750	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30412433					SNP	C	C	C	T	T	C	T	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087814	NES16611421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142015547 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr586413	regulatory region 586413	705 bp proximal
Rr586414	regulatory region 586414	1376 bp proximal