rs30412117 SNP Detail

Summary

• ID
  rs30412117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86747096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTC TCTTGGATGG ATGAAGCATT
  R
  AGGAGAACTC TGCTCCACAG ACTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45926709	mCV23945488	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A
ss51749884	NES14800415	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G		G	G	G		G		A
ss133359073	ENSMUSSNP7010023	ENSEMBL	ENSEMBL_Sanger	f	SNP			G					G
ss321847152	CHEV_6_86720108	CHEVERUD	SCREENING_POP	f	SNP											A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30412117					SNP	G	G	G	A	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749884	NES14800415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86747096 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633505	regulatory region 633505	860 bp distal
Rr633506	regulatory region 633506	1989 bp proximal