rs30411725 SNP Detail

Summary

• ID
  rs30411725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57519689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTGATT TTTACATTGA
  AACAATAGTG GGTCTATTGA TCTTGGTGGC AGCTAAGCTC TGCAATGTTC AATTGATCTA
  CGGTCATGAT GTCTTACTAT TACACAGTCA GAGCTATTCT TACCAAGGAG AAAATCATTA
  ATGAGAGACG GCTAAGTAAG ATCTCCTACA GTATTAAGTC TAATGTCCAG ATAGTGTGAA
  Y
  CATTAAAGAG AAGCAGCAGT CACTTTATTC TTTAGTTATA CTTTCCTCTG AGGTACTTAA
  GGCCACAGTG GTAGCTGAAA TTAATCACTT TTATTTAATT TCACTTTTTT TCTTTTTTTG
  CTGTCATGAC TTTTGCAGAT TTTGTTCTCA GGGGTTACTG AGAGGAACCT CTGTCTCTTC
  TCACCTTCCC TTTACCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss45924909	mCV25134754	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				C		C
ss51315071	NES13763370	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		C		C	T	C
ss133241496	ENSMUSSNP303226	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs30411725					SNP	T	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315071	NES13763370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57519689 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	3 bp downstream
Rr379418	regulatory region 379418	380 bp downstream
Rr631143	regulatory region 631143	1273 bp distal
Rr631144	regulatory region 631144	959 bp proximal
Rr631145	regulatory region 631145	1940 bp proximal
Tssr61161	transcription start site region 61161	1612 bp upstream