rs30411233 SNP Detail

Summary

• ID
  rs30411233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108814783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTTGCCC CAAACCCTAA GAGCCTTTAA GAATCAGCAC
  TTGTGCTTGT TTTCTGCAAC TTCATGGTCC AGTCTCTCCT TTGAGGACCC CGTCCTTCTC
  Y
  GCACACGCAT CTCTCTCTCC TAACTGCACT CTCACTTTAA ATCATGGCTT TAGCTGGAAG
  GATCTCTCCT AACGGTTCAT TCTGAAGGGT CATTTTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45924539	mCV24063845	ABI	CRAMUS_MOUSE	f	SNP		T	T					T	C
ss51808889	NES14771196	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	C	T	T	C
ss133510234	ENSMUSSNP4852906	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30411233					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808889	NES14771196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108814783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368139	regulatory region 368139			1696 bp downstream
Rr368140	regulatory region 368140			1448 bp downstream
Rr368141	regulatory region 368141			1759 bp upstream
Rr636220	regulatory region 636220			950 bp distal
Rr636221	regulatory region 636221			199 bp proximal
Rr636222	regulatory region 636222			1497 bp proximal
Tssr58109	transcription start site region 58109			1721 bp downstream
Tssr58110	transcription start site region 58110			1550 bp downstream
Tssr58111	transcription start site region 58111			1508 bp downstream
Tssr58112	transcription start site region 58112			1485 bp downstream
Tssr58113	transcription start site region 58113			1466 bp downstream
Tssr58114	transcription start site region 58114			1452 bp downstream
Tssr58115	transcription start site region 58115			1415 bp downstream
Tssr58116	transcription start site region 58116			1189 bp downstream
Tssr58117	transcription start site region 58117			1170 bp downstream
Tssr58118	transcription start site region 58118			1124 bp downstream
Tssr58119	transcription start site region 58119			1083 bp downstream
Tssr58120	transcription start site region 58120			1391 bp upstream