rs30410906 SNP Detail

Summary

• ID
  rs30410906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTTTTG AATCCTGTGT
  TTCACAAAGG CACAAGAGTT GCTTTCCTAA ATTTAAGGAA AAAGAAGTCA GTATTTCACT
  GACTTGATTT CCAGCTCTGT GTGACATGAG CCAAGCCAAC AGAGAGCGAG GTAATAACAT
  GGTAAGGAAC AGACTCCCAT TCACCAAGTA CACAGGATAG GCCCTGAACT GACCTAATTC
  Y
  CGCACGTGTC TCAGAGACAT TTCCTTTCCT CAATACTCCT ACGGCTACTG TTACCCTAGA
  GAGATCTCCA CTGTCCAGTA TGACAGCCAC TAGCACTTGA GATGCAACCA GTCTGAATTT
  GGAGGGCTAT AAAGTGTCAA ATTGAACTGG ATTCCAAAGA GAGTACAAAA GTAACTGAAA
  TATCTCCTCG AGTAACTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45428510	mCV23994003	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss135872285	ENSMUSSNP2114482	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320957249	CHEV_3_127532106	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30410906					SNP	C	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622837 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	367 bp downstream
Rr584870	regulatory region 584870	1672 bp distal
Rr584871	regulatory region 584871	1031 bp proximal
Rr584872	regulatory region 584872	1621 bp proximal