rs30410440 SNP Detail

Summary

• ID
  rs30410440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130054923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCACAGT GCAGTGTTTG GCAGAGTCAG AAGATCTGCA
  GCAGTGGCGA TGGGGCTAGA AATTGGCACT CTGAAAACAA GAGCTTTTCT GTTATTCTTA
  M
  TATCTTTTAA ATTGTGCTAT ATAGATTTTT GGGTCTGGCT CATTTTACTA TGTGGTATTT
  TTATTTATCT GCAAGGGTTT TTTTTTTAAT TATAAAGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45427637	mCV22994986	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss135893360	ENSMUSSNP1129254	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30410440					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130054923 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Gm66086	predicted gene, 66086	1897 bp downstream
Rr585149	regulatory region 585149	1380 bp distal
Rr585150	regulatory region 585150	567 bp distal