rs30409884 SNP Detail

Summary

• ID
  rs30409884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19320990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCCTTGC AGAGCCTGGC ACCTCTGTGA TGCCCAGGAA
  TTCATCTCTT AGCACCTTTA CACTTCTTGC CAATCAGCTG CTAATATTGG CTTATTTTAA
  R
  AAGCCAAATA TAAAATTGCT ATTCTTCATA TACTATTTAA TGTTTAATGT ATCTTTGTGT
  ATGGTGAACA TATCAATTTG CATTTTCTTT CAAACTAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45428096	mCV24211574	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss134666397	ENSMUSSNP6562387	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
ss320678295	CHEV_3_19166826	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30409884					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19320990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573967	regulatory region 573967			1705 bp distal
Tssr32690	transcription start site region 32690			1887 bp upstream
Tssr32691	transcription start site region 32691			1852 bp upstream
Tssr32692	transcription start site region 32692			1821 bp upstream
Tssr32693	transcription start site region 32693			1803 bp upstream
Tssr32694	transcription start site region 32694			1717 bp upstream