rs30409600 SNP Detail

Summary

• ID
  rs30409600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72280231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA CACACCTGTA ATCCCAATGG
  R
  ACGTAAACCT GGTATGGCAG TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45925891	mCV22350914	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss133283784	ENSMUSSNP4747654	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
ss321821404	CHEV_6_72253241	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30409600					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72280231 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	353 bp distal
Rr632126	regulatory region 632126	873 bp proximal
Sftpb	surfactant associated protein B	1363 bp upstream
Tssr57078	transcription start site region 57078	1056 bp upstream
Tssr57079	transcription start site region 57079	1072 bp upstream
Tssr57080	transcription start site region 57080	1345 bp upstream
Tssr57081	transcription start site region 57081	1379 bp upstream
Tssr57082	transcription start site region 57082	1793 bp upstream
Tssr57083	transcription start site region 57083	1821 bp upstream