rs30408697 SNP Detail

Summary

• ID
  rs30408697
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGTGTC ATTGTGTGAA
  TGTATGAGGT TTAGTATATG CAAGTGTGTG TGTAGGGTAT ACATGTAGCT GAATGTGTAA
  GAGTTCATGT GAAGTATGAG TATGTCTGCA ATTGAGTGTA CGTCAGTATT TCTGTGTGTA
  CACATGTATG TGGAGTGTTT AGGTACGGCA AGTATATGGA CTATGTATCT ATGTATGGGT
  K
  TATGTATATA AGTATTGTGA GTGTATGGTA TCATTGTGTG AATGTGTATT TGAGTATAAT
  TGTACATGTA TGGATAGCTG TATAGAATGT ATGAGCACTG TGCATATATG TTGTATGTGA
  ATGTGTGAGA GTATATGCAT AGAGTACATA AGTTGAACGT GTATATGACA GTGTGAGTAT
  TGTACAGTGT ATGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss45426922	mCV24970913	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss136100784	ENSMUSSNP1202670	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321028032	CHEV_3_151767214	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs30408697					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1178 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			549 bp proximal
Rr587453	regulatory region 587453			1277 bp proximal
Rr587454	regulatory region 587454			1343 bp proximal