rs30408659 SNP Detail

Summary

• ID
  rs30408659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTTAA AAATAGCATC
  CTTTCATGTA AAGGCAAGTT GAACACGTGC TCTCCTTTGC ACATGTTTGG CCTGGCCCTT
  GGCTTCCCAT TGTTGAGTCA TGAACAAAGT GAATCTGTCA AATAATCAGT TTATGAAGAG
  GAATTTATAG AATCCCATAC TGGAGAAGCC ACAGGTTTGA GCAGGGCTTT TATGCGTCTA
  Y
  GTTCATAAAA AGATGACTCG GCCTTTTCTC TTTCTGTGAG AACACACCAA GCAATGACTC
  CCATCCCCAC AGTTCTGCTT TTAGACTTGT AACTAAGATT TCAATAGATG AAGTAGCAAT
  TTCCAATAGT TTTAGCATTG GTGTTATAAT TCGCGCACGT GTCTAGCACG TTGACTTTTC
  ATTTGAAAAA CTGGAGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45426378	mCV23466474	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		C
ss46955877	NES10677209	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		T	C	C	C		T	C	C	C
ss135837354	ENSMUSSNP2659467	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320946784	CHEV_3_126328263	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30408659					SNP	T	T	T	C	T	C	T	C	T	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955877	NES10677209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			535 bp upstream
Gm64675	predicted gene, 64675			1830 bp upstream
Rr584659	regulatory region 584659			within coordinates