rs30408656 SNP Detail

Summary

• ID
  rs30408656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68948917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGTGAAC CGTGTAACCA CATTAGATTT TGAAAAACAA
  TGCAAGGATC AGATTAGAAA CAGAAAGTGG GATTGTGAAG ACCGCAGCCT CCGGAGAGGA
  R
  AGGGCAGCCA CCGTTTAAGG AGTGCAGAGC TAGAATATGG CAAGATGAAA AAATCTTGAA
  AATGGGTTTT ACTGAAGATT ACCAAAGTGA ATGTATGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45426375	mCV25211950	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss135264667	ENSMUSSNP4151463	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320791793	CHEV_3_68845506	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30408656					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68948917 () rs orientation: forward

Symbol	Name	Function Class
Rr578115	regulatory region 578115	1075 bp distal
Rr578116	regulatory region 578116	within coordinates
Rr578117	regulatory region 578117	628 bp proximal
Trim59	tripartite motif-containing 59	Intron