rs30407648 SNP Detail

Summary

• ID
  rs30407648
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121087501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTATAT GACAGTGGCG
  TGAAGCAAGA TGAGGTGGTA AGAAGTGATT GGAAGGGTGG AGAGATGGCT CAGCAGTTAA
  GGTCTTTGTT CTTGTGCAGG ACCAGGGTTT GGGTCCCAGC ACCCATATGG TGGCTCACAG
  CCATCTATAA CTCCAGTTCT AGGAACCCTG TGGGGATTGA GTGGGGTCCT GAGTGAATGT
  R
  TATTGTTGAT ATGGCCAGGC CCCGTGGGAG TGGCAAAGCC TTCTGTAGGT GAAGTGCAGA
  GAGATGACAA AGCCTTTCTC TGGTCCTTGT TGGAATGTTG ATAGAATATG CAAAGTATAG
  CTTTCTTCCC CCCCAGAGAT GTTACAGCCT GAAGACTGCT CCCATACAGA GACTGTTCCT
  ACAGAGCTAA GCTTGCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45427499	mCV23993250	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135717699	ENSMUSSNP3004744	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30407648					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121087501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			1563 bp distal
Rr584040	regulatory region 584040			2000 bp distal
Rr584041	regulatory region 584041			424 bp proximal
Rr584042	regulatory region 584042			544 bp proximal
Tssr31436	transcription start site region 31436			1990 bp downstream