rs30407093 SNP Detail

Summary

• ID
  rs30407093
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTTCGC ATATATATAT
  ATGCATACAT ACATACACCA AGCTTTGCTT TAATTCAGTT AGGTTTGTCT GGAATATACT
  TTGACACATG AATAAAAATG TTTCCGATTT TCTTCCTTTT GATCTACCTC TTTAAAAAAA
  AACTTTTGGG GGTTCTATTC ATTGCTTTGA AAAGTTTTCC AGTTAGGCAT CTATAAGAAC
  W
  TTTGTCCGAT AGAAGGAATT TGAAGAAAAA ACCCTAAACT TCAGATATCC ACAGAAGGTG
  AGGAGAGTTT ACAAACTATT TATAAAAACA AGCAAACAAG CAAACAACCC TTGATTATCG
  TTTAGAATGC AAACACCATC TGTAAATTCC AGAACCATTT CCCTGGATCT CAGGTTCTGA
  AGCCCCAGTG TCATGGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45427004	mCV23494723	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss135676619	ENSMUSSNP4768847	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30407093					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			165 bp upstream
Cpgi13743	CpG island 13743			491 bp proximal
Gm52613	predicted gene, 52613			89 bp downstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1467 bp distal
Rr583815	regulatory region 583815			898 bp distal
Rr583816	regulatory region 583816			1295 bp distal
Rr583817	regulatory region 583817			75 bp proximal
Rr583818	regulatory region 583818			746 bp proximal
Tssr35360	transcription start site region 35360			436 bp downstream
Tssr35361	transcription start site region 35361			461 bp downstream
Tssr35362	transcription start site region 35362			526 bp downstream
Tssr35363	transcription start site region 35363			574 bp downstream
Tssr35364	transcription start site region 35364			610 bp downstream
Tssr35365	transcription start site region 35365			670 bp downstream
Tssr35366	transcription start site region 35366			688 bp downstream
Tssr35367	transcription start site region 35367			725 bp downstream
Tssr35368	transcription start site region 35368			826 bp downstream
Tssr35369	transcription start site region 35369			867 bp downstream
Tssr35370	transcription start site region 35370			910 bp downstream
Tssr35371	transcription start site region 35371			1412 bp downstream