rs30407091 SNP Detail

Summary

• ID
  rs30407091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATCCC AGCAACAGCC
  CCTGGAGTAT AGGAGGCCCC GCCACAAGGC TCGTGAAGAA GTGGAACAGA GGCCTCAGCA
  CAGTCCACTC AGTCCACTGT CAGCCTGAGA CGCCCGCCAA GCTGGCTGGC TGAAAGAACA
  TGCTGGGTCT GTTCTGTTTG CTGTAGTTTT CTGAGCAGGC TCCATGGTGA GCGAAGAGGC
  R
  AACAGGAATC TTCCATTATC CCTTTCAGCT GAAAAGAAAC CTCACCACAG AATGCACTTA
  CTGTGAAAGT TGGTACAAAC AGCAGCCACG GGGAGGTCGC GATTAGAGGA GGCTTCCAGG
  GAGAACGGCT TCTTAGAGAG TTGGACTCTG ATGGGCAGAG GGAGATGGTG ACGGGTGAGG
  GGTGAACGAA AGAGGGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45427002	mCV24207534	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss47467630	NES10329138	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30407091					SNP	A	A	G	G	G	A	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467630	NES10329138	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			1005 bp distal
Rr587720	regulatory region 587720			1272 bp distal
Rr587721	regulatory region 587721			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant