rs30407080 SNP Detail

Summary

• ID
  rs30407080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121889425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATCTATCTA TCTAACCACC CACCCCATCC ACCCATCCAT CCATCCATCC ATCCATCCAT
  CTATCCATCT ATCCATCTAT CCATCTATCC ATCTATCCAT CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTACCC CACCCACCCA
  TCCATCCATC CATCCATCCA TCCATCCATC CATCTATCCA TCTATCCATC TATCCATCTA
  TCCATCTATC CATCTATCTA TCTATCTATC TATCTATCTA TCTATTTATC TACCTATCTA
  Y
  CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTACCT ATCTACCTAT
  CTATCTATCT ACCTATCTAT CTTCTTTATT GGTTAGCCAC AATTCAATTC ACTCTTTGTG
  AGTGAATGTT TCAGAAGCCT GTTCACACTG CCTGATTTAT TCTTGCCTCT AATTCACCAT
  CCCAAACAAC CCAAATAGCC CAGAGTGATT TTTACACCGT GGCTTTTTCC ATGTAGTTGG
  AAATAAATTG TGAAGGTTGC ACTTTACATC TGCCAGGAAA CTAATTCTGG GATCTTTGCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45425871	mCV23985215	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30407080					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121889425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			622 bp distal
Rr584230	regulatory region 584230			1072 bp proximal