rs30406509 SNP Detail

Summary

• ID
  rs30406509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70003384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATCTGC CTCCTCCTGG
  CTGTTTTGTA CAGTGAATGT CTCATAGGAC TCAGAAGGGA GTAATGACTT ATGGCTCTAT
  CTCCTAACCC TGGGAGTATA GACCAAGCAC ACCCAGGAGA GGGGGTCGTG ATCTCACAGG
  TTGCACATGG GCCACTTACA GCCCCATCCA GTTTCCAGGT ATGTCCCATG ATACATCAGC
  Y
  TTTGCTCATG GACTCTCCCT CCTCTGTGGC CTCGTGGGAT CTGTGCTGAG AACCTAGAAG
  GCCAGCTGGC CACAGTGTCT CCAAGCAGCT TCGAGCTGCT TCTTGTAATG CTGGCGTCAT
  CTGAGCCAAT TGGGGAGAAC TCGGGTGATT AGACAGAAGT TAGATTTTTC TTTCTTTTGA
  GACAGGGTCT CTATTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39182018	mCV22654170	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss51529300	NES14632424	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C	C	T	T	C	T
ss139676554	ENSMUSSNP4186827	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30406509					SNP	C	C	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529300	NES14632424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70003384 () rs orientation: forward

Symbol	Name	Function Class
4930480K23Rik	RIKEN cDNA 4930480K23 gene	within coordinates
Rr494753	regulatory region 494753	1429 bp proximal
Tnfrsf10b	tumor necrosis factor receptor superfamily, member 10b	1537 bp upstream
Tssr126375	transcription start site region 126375	1535 bp upstream
Tssr126376	transcription start site region 126376	1607 bp upstream