rs30406406 SNP Detail

Summary

• ID
  rs30406406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69032281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATGTACA TTCCATTTAC ATGAAGCACT CAGAATAGGC
  AATCAAAACA AACATTGCTT TGGGTTGGAG TAGCTGAGAA AGAGAATCAT TGCTAATGAC
  R
  TATATCAGGA GTTCTTCAAA GAGTAGAAAA TATTCTAAGA TTTGACTTAG GTGCTGATTG
  TGCAACCATT TAAACACATT ACAAACCACT TTATATGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45424467	mCV24616007	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss135265137	ENSMUSSNP1508607	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320791951	CHEV_3_68928870	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30406406					SNP	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69032281 () rs orientation: forward

Symbol	Name	Function Class
Kpna4	karyopherin subunit alpha 4	Intron
Rr578129	regulatory region 578129	1003 bp proximal
Rr578130	regulatory region 578130	1087 bp proximal
Rr578131	regulatory region 578131	1235 bp proximal
Tssr33536	transcription start site region 33536	408 bp downstream
Tssr33537	transcription start site region 33537	1893 bp downstream