rs30406164 SNP Detail

Summary

• ID
  rs30406164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106695476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGCCCTT TGATACACCC AGCACTTGTC TGTTGAGTAA
  ACTTGCCATA TACTTTCAGT TGCCTAGTAG GAAAAAGGGC TTGGTGCTTC CTGTGACCAT
  R
  TGATTAGTCT CTCTTGCTTA ATTTCATTTC TACCATGCCT GTGGCAGGAA GTGGGGGAGT
  AATACTTCTT TGAGTACATA TGTAGTGCCT TGTAACTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45425452	mCV23492346	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135580360	ENSMUSSNP3485705	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30406164					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106695476 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	1637 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	1666 bp proximal
Rr582869	regulatory region 582869	1979 bp proximal
Tssr1002	transcription start site region 1002	133 bp upstream
Tssr1003	transcription start site region 1003	372 bp upstream
Tssr31142	transcription start site region 31142	101 bp upstream
Tssr31143	transcription start site region 31143	599 bp upstream
Tssr31144	transcription start site region 31144	639 bp upstream
Tssr31145	transcription start site region 31145	698 bp upstream
Tssr34999	transcription start site region 34999	42 bp upstream
Tssr35000	transcription start site region 35000	408 bp downstream
Tssr35001	transcription start site region 35001	1843 bp downstream
Tssr35002	transcription start site region 35002	1874 bp downstream
Tssr35003	transcription start site region 35003	1887 bp downstream
Tssr35004	transcription start site region 35004	1913 bp downstream
Tssr35005	transcription start site region 35005	1969 bp downstream
Tssr35006	transcription start site region 35006	1983 bp downstream