rs30405592 SNP Detail

Summary

• ID
  rs30405592
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58393481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGGAAC TCTTAAGTCA
  GAAATGTATG AAGACCCTAA AATGCCTGTA GGTTTATCAT GGTCTTCCGT CCTTTGTTAC
  CATGGTCTCA TAGTCATAAA TAGATGGAAG TTTTCTCTAG AGAGTGCCGT TACGTATAAG
  ACAGCATGTA CGGAGCCTGA TGAACTGGGT ATGGCTTTGT GCAAATGAGT GAGTGCAGTT
  K
  CACTCAGACG CCAGAAGAGG GCGATGAATC CCTTGAGGGC CACGAGGCAA GGTGATAACA
  TGGCTGGTAT GGGTGTGCTT CTATGTCACA TTAATAGTTT TATGTAAAAC AAATATGCTC
  TGCACTGAGG AGGACTGTGG AGGTTTCACT GTTTGGTTTA TTACCTTTCC TGTCAGAGAT
  TATGAACAAG CCAAACAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45426524	mCV24483794	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	T
ss135206580	ENSMUSSNP5701661	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30405592					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58393481 () rs orientation: forward

Symbol	Name	Function Class
Rr577231	regulatory region 577231	within coordinates
Rr577232	regulatory region 577232	7 bp proximal
Rr577233	regulatory region 577233	1268 bp proximal