rs30404997 SNP Detail

Summary

• ID
  rs30404997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131792631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCTCAGGC ACCCAAAACA TTTTACAATG GCGAGAAGGG
  GATTTGCTCT CTTTTGCACT TTCTCTGCCA AACTCTCAGC ACTGGCAGGC AAGATCCGCA
  R
  TAGACTTGCA TTTCTCACTC AAATAGAACT GCGAATAAAT CAATTGGCAG GAAGAAAATA
  ATGAGGTGAC AATGACAGTT TCTTAAGTGC CTGCAAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45425142	mCV23619675	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135908765	ENSMUSSNP4795317	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30404997					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131792631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	675 bp distal
Cpgi13842	CpG island 13842	96 bp proximal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585412	regulatory region 585412	1568 bp distal
Rr585413	regulatory region 585413	within coordinates
Rr585414	regulatory region 585414	310 bp proximal
Rr585415	regulatory region 585415	576 bp proximal
Tssr31747	transcription start site region 31747	1571 bp downstream
Tssr31748	transcription start site region 31748	1415 bp downstream
Tssr31749	transcription start site region 31749	1056 bp downstream