rs30403561 SNP Detail

Summary

• ID
  rs30403561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132405846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTGCACA TGTTTGGCAT CTTTGGGCTC CTCTTTCAGC
  TCTAAACTTG CTGTGTCTGT AAGTCTGGCT AAATGGCAGT GAGTGTAACC GCACCACAGC
  Y
  CAAAGGCCAT CTAGTCTTCA AACATGGAGT CCAGTTCTCT TCATCTAGCT TCACACAGGT
  CCTCAGCACA GGCAAGCATG GATCCAGATG ATTTGTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45425634	mCV22641089	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135913833	ENSMUSSNP5711283	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30403561					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132405846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585446	regulatory region 585446			1374 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant