rs30402414 SNP Detail

Summary

• ID
  rs30402414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCATGGCT CCTCCTACAA
  TCCTCCGTGG TTTCCCATAA TCCTCCATGG CTCCGCCCAC AACCACCAAT GGTCCCGCCC
  ACAATCCCCA ATGGCTCCGC CCATAACCCT TTACTGCTTA ACACTAATAC AGTAAAACTG
  TATTTACGGT AAAGAAGCAT TGAAGAACAG CATTTAAAGG CTGGGTTGTG ATCAGTTGTC
  Y
  GTCAAGAGCC CTGTTGGTGT CAGGGCTTCA GAGTCCCATT GTAATTTGAG TGGGGAAGCA
  GAAGTGACAA GCCCTTAGAT TGAACTTCGT GTTTGTGTTT TAGTTTGTGT TTGTTTGTTT
  TTAAGTTCTC ATGTGCTCAT GATTGCTCCT CTGCCTCCAT GCCTTAGGGC TGCCATTCAA
  AGATGGCAAA ATGCATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45426209	mCV23466510	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss46955825	NES10677182	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		T	C	C	C		T	C	C	T		T
ss135837318	ENSMUSSNP4738849	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320946772	CHEV_3_126326608	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30402414					SNP	T	T	T	C	T	C	T	C	T	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955825	NES10677182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm64675	predicted gene, 64675			175 bp upstream
Rr584659	regulatory region 584659			1511 bp proximal