rs30402305 SNP Detail

Summary

• ID
  rs30402305
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125197148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTACTGAA ATTGTCCGAA
  TATTACATGT ATTGCTTATA ACTGAAGACA CACACACCAG ATTAGAGAGT ATTCTGCAGC
  TCTATTCTGT CTTGAAACAA GTTTTCATTT TTTTTCTTGT ATATTTATAT TTAAATATAT
  ATATGAATAT ATATATATAT AATTTTTAAA TTTGAGAAAT AGAAATGTAG TTTCCCATAG
  S
  AATCAAATTT TACCTCTGTT AATTAACATT ATATAGTTTT ACATATTTAT CTGTCCTTAC
  TGATAACACA TGTTTATGCT ATTATAAGTA TCAGGATTTG GTAGCTCACA GACAGTTCTC
  CAAGTTTTCT ATTGCTCATT GCTGGCTTTT GTTCTGTTTG AAATTAGACT CTTTGGCTGG
  CACATATTCA CAACAGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45426107	mCV24033618	ABI	CRAMUS_MOUSE	f	SNP		G	C		G		G
ss61078012	NES16589251	PERLEGEN	MM_PANEL2	f	SNP	G			G		C	G	G	G		G	G		G
ss135807821	ENSMUSSNP6214898	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C				G
ss320936161	CHEV_3_125106417	CHEVERUD	SCREENING_POP	f	SNP										G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30402305					SNP	G	G	C	G	G	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078012	NES16589251	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125197148 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	577 bp upstream
Rr584608	regulatory region 584608	93 bp proximal
Rr584609	regulatory region 584609	588 bp proximal
Tssr31558	transcription start site region 31558	573 bp upstream
Tssr31559	transcription start site region 31559	826 bp upstream