rs30402212 SNP Detail

Summary

• ID
  rs30402212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107348701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACTGTAC CTCTTAGGCT
  GGGGACTAGT ATATATGGAG GTTATGTCCA TGATGCATTC CTTCTTTCCT AGGACCCTGG
  GCAAGCACGA GGGCAGATAA CATACCTAGT TCTGCCACTA AGTGGGTCCC TGTCTCTTCC
  CTGTTGAGCC AGGAGATGGG GGGAAGGGCA CGTATAGGAG CCCATCCCTC CAACAAAGCA
  Y
  TGGGGGCTTC AGCCTGGCAG ACGCACTGTG TTGCCCAGGG ACATCTGTGC CCCCCACAGG
  GGTGCTATGA GCATGCCCAT CCCTGTAGGA GGGAAGAGGG GAGGAGGCGG TGGGTGCCGT
  GGAAACTTGG GCTCCTGACA ACTTGAGGGC TGCCACAGAA ATAGCTGCCT TAGCTCCCCG
  AACCAGAACA GCAAGTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45424929	mCV24802262	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135584038	ENSMUSSNP421858	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30402212					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107348701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A330043J11Rik	RIKEN cDNA A330043J11 gene			within coordinates
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4			Intron
				mRNA-UTR
Rr582974	regulatory region 582974			1897 bp distal