rs30402068 SNP Detail

Summary

• ID
  rs30402068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68189235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGGATGA CAGTATATCC TTTTAATGGA TGAATAATAT
  TCATATATGT TTTCTCTTTA TCCATTCATC CATCAGCACA CACATTGGTT AACTCATACT
  Y
  TGGCTATTGT GAATTGTGTT AGAATAAACA TTGAAGCATA GGTATTTCTT TGTTGTACTG
  ATTTTTTTTT TAACTGTAGA CCAAGTGGTA GGGTGGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45425412	mCV24617334	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135262158	ENSMUSSNP4250562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320791286	CHEV_3_68085824	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30402068					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68189235 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	1274 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	361 bp upstream