rs30400836 SNP Detail

Summary

• ID
  rs30400836
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101193526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGGTGGT AACCGCGTAA
  CTCTGTGACT ATGCAGAAAG CTGTTGAACT GCGCACGGCA AACGGGCAAA CTGTGTGGTA
  TGTGAATTGT ATACCAATGA GCTTGTTTGG GATATCACCA TCCTTGTCAA GGGAAGGCCT
  GACCTTGTTC CTGTCTAACA GTGAGAACAC GGCCACTTCT GGCCAGGCCC GTTTCCTTAT
  M
  GGTGGATAGA AGCTTGTAAT TTAAAGTTCT CAGGATTGCC AAAGAAAACC AGGCTACCTA
  ACAAGCACCT GACTTCTCTC CAGTAGCCAT GGTCACCGCA GTGACAGAGT ACATGAATAG
  GCTATACAGG GTTCGATACG ATGAGTGGTC GTTCTCATTC CCACCCCGTT TCTGGGACAT
  TCTCTCTAGA TAAAGTTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45425697	mCV22287083	ABI	CRAMUS_MOUSE	f	SNP	A	C					A		A
ss46813208	NES10715667	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	C		A	A	A	A		A	A		A
ss135546265	ENSMUSSNP5209891	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							A
ss320851728	CHEV_3_101090133	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30400836					SNP	A	C	C	C	A	C	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813208	NES10715667	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101193526 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr397889	regulatory region 397889	1659 bp upstream
Rr581991	regulatory region 581991	within coordinates
Rr581992	regulatory region 581992	1719 bp proximal
Tssr30895	transcription start site region 30895	355 bp upstream
Tssr30896	transcription start site region 30896	430 bp upstream
Tssr30897	transcription start site region 30897	465 bp upstream
Tssr34780	transcription start site region 34780	1336 bp downstream
Tssr34781	transcription start site region 34781	1631 bp downstream
Tssr34782	transcription start site region 34782	1672 bp downstream
Tssr34783	transcription start site region 34783	1687 bp downstream
Tssr34784	transcription start site region 34784	1917 bp downstream