rs30400679 SNP Detail

Summary

• ID
  rs30400679
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:59896353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AACTGCACAT ACGGACACTG TCCTCACAGA ATGTGCACTC ACACTTCCAT CTGGGCTTTT
  CTTGATGATG GCTGTGAGAA ACAGAAATGC CAGGCTGATT CTCTAACTTC TCAGAAATGA
  TGAAAGGCTC CTGGAGCTAA ACCAAGGAGC GCCATTCACA GGTATGGCTT CTGCCTTAGA
  TGACCACATG GTGGGCTGAG TCTTCCTGAG TAGTGGACGT TTTAACTTCC CATAAATAAC
  ATCCTTTGTT TGATCTTGTT TCCCTCTCTG CCCTGTTATC AGGAAGCTCA GAGATCAGCT
  M
  TAGCCACATT AGTACTTATG GTCAGGACAG CAGCATGTCC TCTCATCTGA CTTATTTACC
  TAGCTAATGA TAATCGGCCA TCACTGCAAA GAGAGGCCCA TTGGACTTGC AAACTTTATA
  TGCCCCAGTA CAGGGGAACG CCAGGGCCAA AAAGGGGGAG TGGGTGGGTA GGGGAGTTGG
  GGGTGGGTGG GTATGGGGGG ACTTTTTGAA TTAGCATTGG AAATGTAAAT GAGCTAAATA
  CCTAATAAAA AATGGAAAAA AATTTAAAAA AATCAAACAA AAGCATAAAT GCAACCAAAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39678522	mCV23264034	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30400679					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59896353 () rs orientation: forward

Symbol	Name	Function Class
Rab11fip2	RAB11 family interacting protein 2 (class I)	Intron
Rr550672	regulatory region 550672	1006 bp distal