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rs30400679 SNP Detail
Summary
  • ID
    rs30400679
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr19:59896353 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                                     
    AACTGCACAT ACGGACACTG TCCTCACAGA ATGTGCACTC ACACTTCCAT CTGGGCTTTT
    CTTGATGATG GCTGTGAGAA ACAGAAATGC CAGGCTGATT CTCTAACTTC TCAGAAATGA
    TGAAAGGCTC CTGGAGCTAA ACCAAGGAGC GCCATTCACA GGTATGGCTT CTGCCTTAGA
    TGACCACATG GTGGGCTGAG TCTTCCTGAG TAGTGGACGT TTTAACTTCC CATAAATAAC
    ATCCTTTGTT TGATCTTGTT TCCCTCTCTG CCCTGTTATC AGGAAGCTCA GAGATCAGCT
    M
    TAGCCACATT AGTACTTATG GTCAGGACAG CAGCATGTCC TCTCATCTGA CTTATTTACC
    TAGCTAATGA TAATCGGCCA TCACTGCAAA GAGAGGCCCA TTGGACTTGC AAACTTTATA
    TGCCCCAGTA CAGGGGAACG CCAGGGCCAA AAAGGGGGAG TGGGTGGGTA GGGGAGTTGG
    GGGTGGGTGG GTATGGGGGG ACTTTTTGAA TTAGCATTGG AAATGTAAAT GAGCTAAATA
    CCTAATAAAA AATGGAAAAA AATTTAAAAA AATCAAACAA AAGCATAAAT GCAACCAAAA
                                                                     
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
ss39678522 mCV23264034 ABI CRAMUS_MOUSE f SNP A A A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
rs30400679 SNP A A A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:59896353 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rab11fip2 RAB11 family interacting protein 2 (class I) Intron
Rr550672 regulatory region 550672 1006 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory