rs30400620 SNP Detail

Summary

• ID
  rs30400620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87343295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA TGGGGATAGA GTGGGTCGGA
  Y
  AGCATCTCTC TCCACTACAG GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45424344	mCV24898888	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss60422893	NES15921558	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	T		C	C	C	T	C	C	C	C	C
ss135461482	ENSMUSSNP6214258	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30400620					SNP	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60422893	NES15921558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87343295 () rs orientation: forward

Symbol	Name	Function Class
Fcrl5	Fc receptor-like 5	Intron
Rr397756	regulatory region 397756	87 bp downstream
Rr579488	regulatory region 579488	93 bp distal
Tssr29807	transcription start site region 29807	201 bp downstream
Tssr29808	transcription start site region 29808	169 bp downstream
Tssr29809	transcription start site region 29809	159 bp downstream