rs30400159 SNP Detail

Summary

• ID
  rs30400159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126401389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTAGAA TTCCAACTTG
  TGAGGAAAGA ACATTTTAAT TGCCATGGTA ACATAAGATC AAGTTGAAGT TTCAGGCGGC
  TCTTTGCGAC TTTCTAGAAG GAAAAATCCT AGAGTGGGAA ATGTTATCAA AATGTTAGGA
  AAGTGACCGT GCAAGAGTGT GTGAGACTCG GCAGTGAGCT CTTAGGATTC CTGAATGATG
  Y
  GCTTCTTACT GCAGAGAAAA GCAGACATTG AAACAAATGA AGAATAAGAG ACATGTATGC
  AGGAGACCGT TCTAGTTTTC TGGTTCATTC TGTTAGACCA GTGAGGAAAG GGAGACTTTT
  GTTTGTTTGT TTGTTTGTAG TTCCTTTTAC AACATTAGTA TTGAGTGTGT CAGACTCATC
  CAAAAGAATG GGGCAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45424200	mCV23467161	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss46955549	NES10678169	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C		C	C	C	C		T	C	C	T		C
ss135837001	ENSMUSSNP4907157	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320946654	CHEV_3_126310658	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30400159					SNP	T	T	T	C	T	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955549	NES10678169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126401389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			1447 bp proximal
Rr584653	regulatory region 584653			1658 bp proximal
Tssr31576	transcription start site region 31576			619 bp downstream