rs30400113 SNP Detail

Summary

• ID
  rs30400113
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTTTGGCA TCATGCTAAG AAGTAATAGT GGTGTCAGGA
  AGGACTCGGG AGTTGGGAGA CACAAGGCAA TGTGGAAGTG AAGCACCTTG GCAGGCTCCT
  W
  AACCAAATTT TACAGGACTT ATAGCCCATG TGCCCTGAAT GGATGGGGAA GACAGGACAT
  ACCTGGCTTT GGAATATTAG CAATGGGGCA GTGGTCTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45924104	mCV24678710	ABI	CRAMUS_MOUSE	f	SNP		A					T	A
ss48071829	NES11869678	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		T	A	T		A
ss133585797	ENSMUSSNP1814421	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss321926471	CHEV_6_118920393	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30400113					SNP	A	A	A	A	A	A	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48071829	NES11869678	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1447 bp proximal