rs30399402 SNP Detail

Summary

• ID
  rs30399402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58418134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACTCAGA ACCTAGTCAG TGCTAAGAAC ATACTGGAAC
  AATGAACTAT TGCCCTACCA GTGTTTCTAC TTTAAAAGGA AACATTTAAA GCAAACATGA
  Y
  GACATTTTAA CAACTGTGGC ATACTGACAT CTCATTGTTT TACACATATT TAATTTTGAA
  AATATTTTTA TGTGTATGAA TGCTTTGCTT GTGTGTATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45425295	mCV25119308	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss135206987	ENSMUSSNP214923	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320783102	CHEV_3_58314635	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30399402					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58418134 () rs orientation: forward

Symbol	Name	Function Class
Rr577239	regulatory region 577239	1975 bp distal
Rr577240	regulatory region 577240	848 bp proximal
Rr577241	regulatory region 577241	1073 bp proximal